PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00736.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 227aa    MW: 24546.5 Da    PI: 9.0624
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00736.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.22.1e-393491562
                   zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                             +++cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknk+s+
  Rsa1.0_00736.1_g00016.1 34 SVRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 91
                             679****************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-302889IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.323589IPR003851Zinc finger, Dof-type
PfamPF027011.0E-333589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGVTCLSNPT QLDHDQKKPS PATGAARPQP AELSVRCPRC DSTNTKFCYY NNYSLSQPRY  60
FCKSCRRYWT KGGTLRNIPV GGGCRKNKRS TTRSLRTTPE PAFSAASLGG FSNNDHIDLS  120
LAFALLNKQP PGSSSQVGFG SSHPSDVESV FGTTQQKGNA VYAFGTGSSG LDMAMSDPNK  180
VLWGFPWQMN GDSFGMMNMG GGGHVDQLDS GRDIWTNMNY INSGALM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2347371e-100AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625535.11e-146PREDICTED: dof zinc finger protein DOF5.3-like
SwissprotQ84TE91e-129DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBLA0A0D3B2H21e-147A0A0D3B2H2_BRAOL; Uncharacterized protein (Fragment)
STRINGBra006675.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61321845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-130TARGET OF MONOPTEROS 6